↓
 
  • Phoronix
  • gromacs
  • OpenFOAM

Performance analysis, tools and experiments

An eclectic collection

Performance analysis, tools and experiments
  • Home
  • Blog
  • Tools
    • wspy – workload spy
  • Workloads
    • Geekbench
    • gromacs
      • lysozyme tutorial
      • PRACE benchmark
    • OpenFOAM
    • Phoronix
      • aobench
      • apache
      • asmfish
      • blake2
      • blender
      • botan
      • build-gcc
      • build-linux-kernel
      • build-llvm
      • build-php
      • bullet
      • c-ray
      • cachebench
      • compilebench
      • compress-p7zip
      • compress-pbzip2
      • compress-zstd
      • ebizzy
      • encode-flac
      • encode-mp3
      • ffmpeg
      • ffte
      • fftw
      • fhourstones
      • fio
      • fs-mark
      • gimp
      • git
      • go-benchmark
      • graphics-magick
      • hackbench
      • himeno
      • hmmer
      • indigobench
      • java-gradle-perf
      • java-scimark2
      • luajit
      • m-queens
      • mafft
      • n-queens
      • nginx
      • numpy
      • octave-benchmark
      • openssl
      • osbench
        • osbench – create processes
        • osbench – create threads
        • osbench – memory
      • parboil
      • pgbench
      • phpbench
      • polybench-c
      • povray
      • primesieve
      • pybench
      • radiance
      • rbenchmark
      • redis
      • rodinia
      • scikit-learn
      • scimark2
      • sqlite
      • stockfish
      • stream
      • stress-ng
      • tensorflow
      • tinymembench
      • tjbench
      • tscp
      • ttsiod-renderer
      • vpxenc
      • x264
      • y-cruncher
  • Experiments
Home→Tags gromacs

Tag Archives: gromacs

gromacs – summary

Performance analysis, tools and experiments Posted on 2018-06-14 by mev2018-06-14

I’ve analyzed the gromacs computational chemistry application using three sample workloads and created an analysis page for the results as well as added them to the overall workload summary. This post describes a few higher-level takeaways I have from the … Continue reading →

Posted in analysis, featured, workloads | Tagged gromacs | Leave a reply

gromacs 5.1.5, Ryzen build issues (use -DGMX_SIMD)

Performance analysis, tools and experiments Posted on 2018-06-12 by mev2018-06-14

I downloaded and built gromacs from www.gromacs.org and used the 5.1.5 version because some of the tutorials/benchmarks still refer to this older version. This post documents steps I used to run gromacs 5.1.5 on a Ryzen processor.

Continue reading →
Posted in workloads | Tagged gromacs | Leave a reply

gromacs – setup notes

Performance analysis, tools and experiments Posted on 2018-06-11 by mev2018-06-11

This post documents steps I used to build, install and run gromacs. gromacs is a molecular dynamics package for simulating proteins, lipids and nucleic acids. It seems to be one of the more common HPC applications. My interest is less … Continue reading →

Posted in workloads | Tagged gromacs | Leave a reply

Archives

  • March 2020
  • August 2018
  • June 2018
  • May 2018
  • April 2018
  • March 2018

Tags

/proc/stat analysis technique c-ray ftrace geekbench geekbench-description gromacs hyperthreading ipc kernelshark likwid likwid-perfctr likwid-topology memory metrics on_core on_cpu OpenFOAM parboil perf performance counters periodic sampling phoronix phoronix benchmark article phoronix cpu suite pmu_tools process tree progress report ptrace rusage Ryzen spectre system hang top-down trace-cmd virtualization wspy

Meta

  • Log in
  • Entries feed
  • Comments feed
  • WordPress.org
©2023 - Performance analysis, tools and experiments - Weaver Xtreme Theme
↑